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Flight Deals from San Juan to San Diego from $203

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Stops

  • Up to 1 stop
    $398

Airlines

  • Alaska Airlines
    $730
  • American Airlines
    $655
  • Delta Air Lines
    $495
  • JetBlue
    $398
  • United Airlines
    $544

Cabin Class

  • Economy
    $398

Departure Airports

  • Luis Munoz Marin International Airport
    $398

Arrival Airports

  • San Diego International Airport
    $398

Layover Airports

  • Charlotte Douglas International Airport
    $655
  • Chicago O Hare Airport
    $675
  • Dallas Fort Worth International Airport
    $700
  • General Edward Lawrence Logan International Airport
    $398
  • George Bush Intercontinental Houston Airport
    $544
  • Hartsfield Jackson Atlanta International Airport
    $495
  • Miami International Airport
    $775
  • New York John F Kennedy Airport
    $566
  • Newark Liberty Airport
    $544
  • Washington Dulles Airport
    $649

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On average save $240 per traveler
JetBlue Logo
JetBlue

07/04/25

SJU
11h 28m
BOS

07/04/25

SAN
JetBlue Logo
JetBlue

07/18/25

SAN
15h 37m
BOS

07/19/25

SJU
$398
Free cancellation within 83 hours of booking
Delta Air Lines Logo
Delta Air Lines

07/01/25

SJU
6h 10m
ATL

07/01/25

SAN
Delta Air Lines Logo
Delta Air Lines

07/15/25

SAN
14h 23m
ATL

07/15/25

SJU
$495
Free cancellation within 83 hours of booking
Delta Air Lines Logo
Delta Air Lines

07/08/25

SJU
6h 5m
ATL

07/08/25

SAN
Delta Air Lines Logo
Delta Air Lines

07/22/25

SAN
14h 23m
ATL

07/22/25

SJU
$513
Free cancellation within 83 hours of booking
United Airlines Logo
United Airlines

07/08/25

SJU
8h 36m
EWR

07/08/25

SAN
United Airlines Logo
United Airlines

07/22/25

SAN
14h 23m
IAH

07/22/25

SJU
$544
Free cancellation within 83 hours of booking
JetBlue Logo
JetBlue

07/08/25

SJU
7h 58m
JFK

07/08/25

SAN
JetBlue Logo
JetBlue

07/22/25

SAN
14h 41m
BOS

07/23/25

SJU
$566
Free cancellation within 83 hours of booking
JetBlue Logo
JetBlue

07/01/25

SJU
8h 2m
JFK

07/01/25

SAN
JetBlue Logo
JetBlue

07/15/25

SAN
14h 41m
BOS

07/16/25

SJU
$576
Free cancellation within 83 hours of booking
Delta Air Lines Logo
Delta Air Lines

07/10/25

SJU
8h 41m
ATL

07/10/25

SAN
Delta Air Lines Logo
Delta Air Lines

07/24/25

SAN
14h 23m
ATL

07/24/25

SJU
$585
Free cancellation within 83 hours of booking
United Airlines Logo
United Airlines

07/01/25

SJU
8h 47m
IAH

07/01/25

SAN
United Airlines Logo
United Airlines

07/15/25

SAN
14h 23m
IAH

07/15/25

SJU
$605
Free cancellation within 83 hours of booking
JetBlue Logo
JetBlue

07/10/25

SJU
7h 58m
JFK

07/10/25

SAN
JetBlue Logo
JetBlue

07/24/25

SAN
15h 39m
JFK

07/25/25

SJU
$617
Free cancellation within 83 hours of booking
United Airlines Logo
United Airlines

06/22/25

SJU
7h 47m
IAH

06/22/25

SAN
United Airlines Logo
United Airlines

07/06/25

SAN
14h 34m
IAD

07/07/25

SJU
$649
Free cancellation within 83 hours of booking
American Airlines Logo
American Airlines

07/10/25

SJU
12h 26m
CLT

07/10/25

SAN
American Airlines Logo
American Airlines

07/24/25

SAN
17h 44m
CLT

07/25/25

SJU
$655
Free cancellation within 83 hours of booking
United Airlines Logo
United Airlines

07/17/25

SJU
8h 43m
ORD

07/17/25

SAN
United Airlines Logo
United Airlines

07/31/25

SAN
14h 23m
IAH

07/31/25

SJU
$675
Free cancellation within 83 hours of booking
Delta Air Lines Logo
Delta Air Lines

07/04/25

SJU
10h 10m
JFK

07/04/25

SAN
Delta Air Lines Logo
Delta Air Lines

07/18/25

SAN
17h 29m
JFK

07/18/25

SJU
$675
Free cancellation within 83 hours of booking
United Airlines Logo
United Airlines

07/10/25

SJU
8h 36m
EWR

07/10/25

SAN
United Airlines Logo
United Airlines

07/24/25

SAN
14h 37m
EWR

07/25/25

SJU
$675
Free cancellation within 83 hours of booking
American Airlines Logo
American Airlines

07/08/25

SJU
12h 26m
CLT

07/08/25

SAN
American Airlines Logo
American Airlines

07/22/25

SAN
17h 12m
CLT

07/23/25

SJU
$700
Free cancellation within 83 hours of booking
American Airlines Logo
American Airlines

07/01/25

SJU
8h 51m
DFW

07/01/25

SAN
American Airlines Logo
American Airlines

07/15/25

SAN
13h 44m
DFW

07/16/25

SJU
$700
Free cancellation within 83 hours of booking
Alaska Airlines Logo
Alaska Airlines

07/11/25

SJU
9h 24m
DFW

07/11/25

SAN
Alaska Airlines Logo
Alaska Airlines

07/21/25

SAN
15h 48m
ORD

07/22/25

SJU
$730
Free cancellation within 83 hours of booking
American Airlines Logo
American Airlines

07/17/25

SJU
7h 30m
DFW

07/17/25

SAN
American Airlines Logo
American Airlines

07/31/25

SAN
17h 44m
CLT

08/01/25

SJU
$745
Free cancellation within 83 hours of booking
United Airlines Logo
United Airlines

07/04/25

SJU
8h 36m
EWR

07/04/25

SAN
United Airlines Logo
United Airlines

07/18/25

SAN
14h 37m
EWR

07/19/25

SJU
$745
Free cancellation within 83 hours of booking
JetBlue Logo
JetBlue

07/17/25

SJU
7h 58m
JFK

07/17/25

SAN
JetBlue Logo
JetBlue

07/31/25

SAN
16h 36m
BOS

08/01/25

SJU
$762
Free cancellation within 83 hours of booking
Alaska Airlines Logo
Alaska Airlines

06/22/25

SJU
7h 22m
DFW

06/22/25

SAN
Alaska Airlines Logo
Alaska Airlines

07/16/25

SAN
15h 48m
ORD

07/17/25

SJU
$767
Free cancellation within 83 hours of booking
Alaska Airlines Logo
Alaska Airlines

07/08/25

SJU
7h 30m
DFW

07/08/25

SAN
Alaska Airlines Logo
Alaska Airlines

07/22/25

SAN
13h 44m
DFW

07/23/25

SJU
$767
Free cancellation within 83 hours of booking
American Airlines Logo
American Airlines

07/04/25

SJU
12h 15m
CLT

07/04/25

SAN
American Airlines Logo
American Airlines

07/18/25

SAN
12h 42m
MIA

07/19/25

SJU
$775
Free cancellation within 83 hours of booking
Alaska Airlines Logo
Alaska Airlines

07/10/25

SJU
8h 4m
ORD

07/10/25

SAN
Alaska Airlines Logo
Alaska Airlines

07/24/25

SAN
13h 44m
DFW

07/25/25

SJU
$777
Free cancellation within 83 hours of booking
Alaska Airlines Logo
Alaska Airlines

07/01/25

SJU
8h 51m
DFW

07/01/25

SAN
Alaska Airlines Logo
Alaska Airlines

07/15/25

SAN
13h 44m
DFW

07/16/25

SJU
$777
Free cancellation within 83 hours of booking
Alaska Airlines Logo
Alaska Airlines

06/21/25

SJU
8h 51m
DFW

06/21/25

SAN
Alaska Airlines Logo
Alaska Airlines

07/16/25

SAN
13h 44m
DFW

07/17/25

SJU
$777
Free cancellation within 83 hours of booking
Alaska Airlines Logo
Alaska Airlines

07/03/25

SJU
8h 26m
ORD

07/03/25

SAN
Alaska Airlines Logo
Alaska Airlines

07/05/25

SAN
15h 48m
ORD

07/06/25

SJU
$790
Free cancellation within 83 hours of booking
Delta Air Lines Logo
Delta Air Lines

07/17/25

SJU
8h 9m
ATL

07/17/25

SAN
Delta Air Lines Logo
Delta Air Lines

07/31/25

SAN
12h 39m
ATL

07/31/25

SJU
$800
Free cancellation within 83 hours of booking
American Airlines Logo
American Airlines

06/22/25

SJU
7h 22m
DFW

06/22/25

SAN
American Airlines Logo
American Airlines

07/06/25

SAN
12h 42m
MIA

07/07/25

SJU
$820
Free cancellation within 83 hours of booking
JetBlue Logo
JetBlue

06/22/25

SJU
11h 28m
BOS

06/22/25

SAN
JetBlue Logo
JetBlue

07/06/25

SAN
16h 36m
BOS

07/07/25

SJU
$887
Free cancellation within 83 hours of booking

Top Deals on flights from San Juan to San Diego

San Juan, PR (SJU) - San Diego, US (SAN)

Alaska Airlines Logo
Alaska Airlines

May 28

SJU
9h 9m
ORD

May 28

SAN

as low as

$203

San Juan, PR (SJU) - San Diego, US (SAN)

Alaska Airlines Logo
Alaska Airlines

May 29

SJU
7h 32m
DFW

May 29

SAN

as low as

$208

San Juan, PR (SJU) - San Diego, US (SAN)

American Airlines Logo
American Airlines

May 28

SJU
9h 9m
ORD

May 28

SAN

as low as

$208

San Juan, PR (SJU) - San Diego, US (SAN)

American Airlines Logo
American Airlines

Jun 3

SJU
13h 36m
CLT

Jun 3

SAN

as low as

$208

San Juan, PR (SJU) - San Diego, US (SAN)

American Airlines Logo
American Airlines

May 28

SJU
10h 16m
PHL
PHX

May 28

SAN

as low as

$208

San Juan, PR (SJU) - San Diego, US (SAN)

American Airlines Logo
American Airlines

May 29

SJU
7h 41m
CLT

May 29

SAN

as low as

$208

San Juan, PR (SJU) - San Diego, US (SAN)

United Airlines Logo
United Airlines

Jun 12

SJU
7h 12m
IAH

Jun 12

SAN

as low as

$215

San Juan, PR (SJU) - San Diego, US (SAN)

United Airlines Logo
United Airlines

Jun 5

SJU
7h 12m
IAH

Jun 5

SAN

as low as

$215

San Juan, PR (SJU) - San Diego, US (SAN)

United Airlines Logo
United Airlines

May 21

SJU
9h 3m
EWR

May 21

SAN

as low as

$220

San Juan, PR (SJU) - San Diego, US (SAN)

JetBlue Logo
JetBlue

Jun 5

SJU
11h 45m
BOS

Jun 5

SAN

as low as

$235

San Juan, PR (SJU) - San Diego, US (SAN)

JetBlue Logo
JetBlue

May 29

SJU
11h 15m
BOS

May 29

SAN

as low as

$235

San Juan, PR (SJU) - San Diego, US (SAN)

JetBlue Logo
JetBlue

Jun 12

SJU
8h 37m
JFK

Jun 12

SAN

as low as

$235

Frequently Asked Questions

What is the typical flight duration from San Juan to San Diego?
The typical flight duration from San Juan (SJU) to San Diego (SAN) usually ranges from 7 to 9 hours, including layover time. Direct flights, when available, may shorten the journey to about 6 to 7 hours. However, most routes include one or more stops that can add extra travel time. It is important to check different flight itineraries as timings may vary depending on weather conditions and connections. Planning ahead by comparing multiple airlines can help you find a schedule that suits your travel needs.
Are there any direct flights from San Juan to San Diego?
Direct flights from San Juan to San Diego are rarely available. Most itineraries require at least one connection, which increases the overall travel time. When exploring flight options, you might occasionally find seasonal direct routes, but they are not common. It is advisable to look into connecting flights from carriers that serve both destinations and be flexible with your travel dates. Booking in advance or consulting with travel agents can also help discover if any limited direct service is offered during your intended travel period.
What are the best transportation options from San Diego airport to downtown?
Travelers arriving at San Diego International Airport have several efficient transportation options to reach downtown. Rideshare services like Uber and Lyft offer door-to-door convenience with fares generally ranging from $20 to $40. Taxis are also available, averaging a similar cost range, while airport shuttles can be a cost-effective alternative, typically costing between $10 to $25 per person. Additionally, public transit such as bus lines provides economical travel, though it may take longer. Evaluate your priorities such as speed, cost, and convenience to choose the option that best suits your needs.
What are the must-see attractions in San Diego for travelers arriving from San Juan?
For those traveling from San Juan to San Diego, there are several must-see attractions that showcase local culture and scenic beauty. Notable landmarks include Balboa Park with its museums and botanical gardens, the USS Midway Museum offering historical insights, and the picturesque Coronado Beach. Visitors should also explore the vibrant Gaslamp Quarter and La Jolla Cove for stunning coastal views. These attractions provide a mix of history, art, and outdoor activities that cater to diverse interests, ensuring a rich and memorable experience during your visit.
What are the top dining options in San Diego for travelers from San Juan?
Travelers from San Juan can enjoy an array of dining options in San Diego that cater to varied tastes. For an upscale experience, restaurants in the Gaslamp Quarter like Born and Raised deliver exceptional steaks, while The Prado at Balboa Park offers a blend of local flavors and artful presentation. For more casual meals, vibrant local Mexican eateries and seafood spots near the waterfront provide fresh and innovative dishes. Many venues offer outdoor seating, allowing you to savor the pleasant weather and dynamic atmosphere that makes dining in this city truly unique.
Is there a specific time of year when San Diego is best visited by travelers from San Juan?
Yes, many travelers find that visiting San Diego during the spring months, from April to early June, offers ideal weather and fewer crowds. This season provides mild temperatures and clear skies, perfect for sightseeing and outdoor activities. While summer is popular due to beach events and festivals, it can be crowded and relatively more expensive. Winter is also a pleasant time with a more relaxed vibe. It is advisable to book accommodations early during peak periods and check local event calendars to ensure you experience the best of what the city has to offer.
What are the best family-friendly activities in San Diego for visitors from San Juan?
Families traveling from San Juan to San Diego have plenty of exciting and interactive activities to choose from. The world-renowned San Diego Zoo and its Safari Park offer engaging animal exhibits, while Legoland provides theme park fun for younger visitors. Beaches with gentle surf, interactive science centers, and maritime museums also appeal to children and adults alike. For outdoor adventures, consider exploring local parks and nature trails. These activities are designed with family enjoyment in mind, ensuring that every member has a memorable and safe experience during your stay.
Are there any cultural festivals in San Diego that travelers from San Juan should not miss?
Yes, San Diego hosts several cultural festivals that travelers from San Juan should consider attending. Events such as the San Diego Latino Film Festival and various neighborhood street fairs often occur throughout the year, celebrating the city’s rich diverse heritage through music, art, food, and dance. Additionally, seasonal events like Comic-Con International and local craft beer festivals offer cultural insights and entertainment. It is advisable to check the local events calendar as dates and venues may shift annually, ensuring that you can plan your visit around a festival that appeals to your interests.
What are the most affordable accommodation options in San Diego for travelers from San Juan?
Travelers from San Juan looking for affordable accommodations in San Diego can find a range of budget-friendly options. These include well-rated budget hotels, hostels, and guesthouses typically ranging from $70 to $150 per night. Additionally, numerous Airbnb listings provide competitive rates in neighborhoods like North Park and Mission Valley. When planning your stay, it is beneficial to compare prices across different platforms and consider locations that offer easy access to public transit. Booking during off-peak seasons may further reduce costs while still offering comfortable and convenient lodging options.
What are the health and safety tips for travelers flying from San Juan to San Diego?
When flying from San Juan to San Diego, it is important to stay informed about both airline and local health guidelines. First, make sure to check for any travel advisories and secure necessary medical documents if needed. Maintain good hygiene by frequently using hand sanitizer and wearing a mask in crowded areas, particularly at the airport. It is advisable to keep copies of personal identification and travel insurance information. Finally, monitor local news for weather updates that might affect travel plans, and always verify the latest TSA requirements to ensure a smooth journey.
What unique shopping experiences can travelers from San Juan find in San Diego?
Travelers from San Juan can uncover a variety of unique shopping experiences in San Diego that go beyond traditional retail. Explore boutique shops in neighborhoods such as Little Italy and the Gaslamp Quarter, where local artisans sell handcrafted items and trendy fashions. Seaport Village and local farmers’ markets also offer a mix of local crafts, souvenirs, and gourmet treats that reflect the city’s coastal charm. These shopping spots provide an authentic glimpse into local culture and allow visitors to take home distinctive mementos of their trip while supporting local businesses.
Are there any special airport amenities in San Diego for travelers arriving from San Juan?
Yes, the San Diego International Airport offers a range of amenities designed to enhance the traveler experience. Amenities include free Wi-Fi, comfortable lounges, and a variety of dining options ranging from casual cafes to sit-down restaurants. Additionally, duty-free shopping and retail outlets provide a convenient place for last-minute souvenirs. For travelers in need of workspaces, business centers are available. These services are designed with comfort and convenience in mind, ensuring that visitors from San Juan have access to everything needed to relax or catch up on work during layovers or upon arrival.
What are the best outdoor activities in San Diego for travelers from San Juan?
Travelers from San Juan will appreciate the wealth of outdoor activities available in San Diego. Popular options include exploring the coastal trails at Torrey Pines State Reserve, enjoying water sports such as kayaking or paddleboarding along the bay, and taking a leisurely bike ride along scenic beachfront paths. There are also ample opportunities for hiking in local parks and enjoying picnics in community gardens. These activities allow visitors to immerse themselves in the natural beauty of the area while staying active and enjoying the city’s renowned mild climate and expansive outdoor spaces.
What are the customs requirements for travelers flying from San Juan to San Diego?
Travelers flying from San Juan to San Diego generally experience simplified customs procedures, as both are within United States territories. Although Puerto Rico is not an international destination for U.S. citizens, it is essential to carry an approved government-issued identification during security checkpoints and boarding. While a passport is not required for domestic flights, non-U.S. citizens should verify visa and entry requirements in advance. Always check the latest TSA guidelines before your journey to ensure you have all the necessary documentation and understand any updates in customs procedures for a smooth travel experience.
What are the best tips for first-time travelers flying from San Juan to San Diego?
For first-time travelers heading from San Juan to San Diego, planning and preparation are key. Start by booking flights well in advance to secure the best connection itineraries and fares, often ranging between 7 to 9 hours total travel time. Arrive at the airport early to navigate security checks comfortably, and be sure to have your government-issued ID ready. It is also wise to research transportation options from the airport, check local weather forecasts, and review the city’s top attractions. This proactive approach ensures a smooth, enjoyable journey and a memorable visit to your destination.

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